PK Cv6 META-INF/PK Bv6BMETA-INF/MANIFEST.MFManifest-Version: 1.0 Ant-Version: Apache Ant 1.6.5 Created-By: 1.6.0-b105 (Sun Microsystems Inc.) Main-Class: selsimtoms.SelSimToMS Class-Path: X-COMMENT: Main-Class will be added automatically by build PK Cv6 selsimtoms/PK Cv6@W selsimtoms/NewMsOutputFile.class2` 7 8 9: 7; < =>? @ AB ACDEF GHIJ GK GLMN iterationsIseqs(II)VCodeLineNumberTableLocalVariableTablethisLselsimtoms/NewMsOutputFile; pIterationspSeqs writeHeader(Ljava/io/BufferedWriter;)VbwLjava/io/BufferedWriter; ExceptionsO writeSample4(Ljava/io/BufferedWriter;Lselsimtoms/SelSimSample;)VpSampleLselsimtoms/SelSimSample;samplei sampleLines[Ljava/lang/String; StackMapTableP1 SourceFileNewMsOutputFile.java Q  java/lang/StringBuilderms RS RT  -s 111 UVW XY ZQ111// segsites: P [\ positions:  ]^ _^selsimtoms/NewMsOutputFilejava/lang/Objectjava/io/IOExceptionselsimtoms/SelSimSample()Vappend-(Ljava/lang/String;)Ljava/lang/StringBuilder;(I)Ljava/lang/StringBuilder;toString()Ljava/lang/String;java/io/BufferedWriterwrite(Ljava/lang/String;)VnewLine getSegsites()I getPositions()[Ljava/lang/String;getSampleLines!Y***   !"#$%>+Y* *  + + + +  +!/"5#9$=%> !>&'()*+E,N+ + +Y- + + 6-++Y-2  + -:6*+2 + + F()* +&,*-00<1^0d4h6n8z9:8=?> !&',-.-3_/n$012330 4()56PK Cv6Hcselsimtoms/SelSimSample.class2n B C DE FGH IJ KL MN OP QR S T UV B W X YZ[ sampleLines[Ljava/lang/String;segsitesI positions()VCodeLineNumberTableLocalVariableTablethisLselsimtoms/SelSimSample;getSampleLines()[Ljava/lang/String; readSample(Ljava/io/BufferedReader;III)VbrLjava/io/BufferedReader;seqs iterationsselectedjlineLjava/lang/String;tkLjava/util/StringTokenizer;tk2pos StackMapTableEH Exceptions\ getSegsites()I getPositions setPositions([Ljava/lang/String;)V SourceFileSelSimSample.java   java/lang/String] ^_java/util/StringTokenizer ` ab c de >? =' fg hi hjjava/lang/StringBuilder kl m_ selsimtoms/SelSimSamplejava/lang/Objectjava/io/IOExceptionjava/io/BufferedReaderreadLine()Ljava/lang/String;(Ljava/lang/String;)V nextToken&(Ljava/lang/String;)Ljava/lang/String;java/lang/IntegerparseInt(Ljava/lang/String;)I replaceAll8(Ljava/lang/String;Ljava/lang/String;)Ljava/lang/String; substring(I)Ljava/lang/String;(II)Ljava/lang/String;append-(Ljava/lang/String;)Ljava/lang/StringBuilder;toString! !< **" #  $%&'!/*""# $%()!@ /:*6+W+:Y: W* d** +:Y:   : 6*  : * S+W6}+: :*SP*`**S1*Yd*`S6+:"n)* ,.%/0081H3S4Y5d6m7y897<=>?@AB=E"F(E.H#f /$%/*+/,/-/.!/,01023d43 m51 6 7P887 ,-9:;<!/*"K# $%='!/*"O# $%>?!>*+" ST#$%@APK Cv6' selsimtoms/SelSimToMS.class2 (V WXY Z[\ ]^ _ `ab cd ]ef Vg h ij k ]l m no V p q Zr s t suv wxyz{()VCodeLineNumberTableLocalVariableTablethisLselsimtoms/SelSimToMS;main([Ljava/lang/String;)VsampleLselsimtoms/SelSimSample;infileLjava/io/FileReader;brLjava/io/BufferedReader;seqsI iterationsoutputLselsimtoms/NewMsOutputFile;tkLjava/util/StringTokenizer;outfileLjava/io/FileWriter;bwLjava/io/BufferedWriter;ierrorLjava/io/FileNotFoundException;error2Ljava/io/IOException;args[Ljava/lang/String; StackMapTableI\^bdelux SourceFileSelSimToMS.java )*| }~Ause: SelSimToMs  java/io/FileReader )java/io/BufferedReader ) selsimtoms/NewMsOutputFile )java/util/StringTokenizerjava/io/FileWriterjava/lang/StringBuilder. .out java/io/BufferedWriter ) selsimtoms/SelSimSample * *java/io/FileNotFoundExceptionFile not found: java/io/IOException IO error: selsimtoms/SelSimToMSjava/lang/Objectjava/lang/SystemoutLjava/io/PrintStream;java/io/PrintStreamprintln(Ljava/lang/String;)V(Ljava/io/Reader;)Vjava/lang/IntegerparseInt(Ljava/lang/String;)I(II)V nextToken&(Ljava/lang/String;)Ljava/lang/String;append-(Ljava/lang/String;)Ljava/lang/StringBuilder;toString()Ljava/lang/String;(Ljava/io/Writer;)V writeHeader(Ljava/io/BufferedWriter;)V readSample(Ljava/io/BufferedReader;III)V writeSample4(Ljava/io/BufferedWriter;Lselsimtoms/SelSimSample;)V(I)Vcloseflush-(Ljava/lang/Object;)Ljava/lang/StringBuilder;!'()*+3*, - ./ 01+Y * Y*2LY+M*2 >*2 6 Y : Y*2 :YY:Y:6  2Y:  ,*2    + !:LY#+$LY&+$"%,r#$%)*#,*-2/>0J1l2w3~6789:6=>?D@ADBCF- 23 45#67*892:9>;<J{=>lY?@wNABDC9 DEFGHIJ5q KLMNOPQ5KR\STUPK Cv6 AMETA-INF/PK Bv6B+META-INF/MANIFEST.MFPK Cv6 A2selsimtoms/PK Cv6@W [selsimtoms/NewMsOutputFile.classPK Cv6HcPselsimtoms/SelSimSample.classPK Cv6' aselsimtoms/SelSimToMS.classPK